Bio::Ontology::OBOterm - representation of OBO terms
Contents
Appendix
The rest of the documentation details each of the object methods.
new
Title : new
Usage : $term = Bio::Ontology::OBOterm->new
( -identifier => "GO:0005623",
-name => "Cell",
-definition => "The basic structural and functional unit ...",
-is_obsolete => 0,
-comment => "" );
Function: Creates a new Bio::Ontology::OBOterm.
Returns : A new Bio::Ontology::OBOterm object.
Args : -identifier => the id of this OBO term [GO:nnnnnnn]
integer of seven digits)
-name => the name of this OBO term [scalar]
-definition => the definition of this OBO term [scalar]
-ontology => the ontology for this term (a
Bio::Ontology::OntologyI compliant object)
-version => version information [scalar]
-is_obsolete => the obsoleteness of this OBO term [0 or 1]
-comment => a comment [scalar]
perl v5.32.1 2021-08-15 Bio::Ontology::OBOterm(3pm)
Description
This is data holder class for OBO terms. It is currently a dummy class since we anticipate that the OBO
term will become more richer with more features being added to OBO flat-file format.
Feedback
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Name
Bio::Ontology::OBOterm - representation of OBO terms
Synopsis
$term = Bio::Ontology::OBOterm->new
( -identifier => "GO:0005623",
-name => "Cell",
-definition => "The basic structural and functional unit ...",
-is_obsolete => 0,
-comment => "" );
$term->add_reference( @refs );
$term->add_secondary_id( @ids );
$term->add_synonym( @synonym );
# etc.
