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Bio::Graphics::Glyph::transcript2 - The "transcript2" glyph

Author

       Lincoln Stein <lstein@cshl.org>

       Copyright (c) 2001 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl
       itself.  See DISCLAIMER.txt for disclaimers of warranty.

perl v5.30.0                                       2019-11-25             Bio::Graphics::Glyph::transcript2(3pm)

Bugs

       Please report them.

Description

       This glyph is used for drawing transcripts.  It is like "transcript" except that if there is sufficient
       room the terminal exon is shaped like an arrow in order to indicate the direction of transcription.  If
       there isn't enough room, a small arrow is drawn.

   OPTIONS
       The following options are standard among all Glyphs.  See Bio::Graphics::Glyph for a full explanation.

         Option      Description                      Default
         ------      -----------                      -------

         -fgcolor      Foreground color               black

         -outlinecolor Synonym for -fgcolor

         -bgcolor      Background color               turquoise

         -fillcolor    Synonym for -bgcolor

         -linewidth    Line width                     1

         -height       Height of glyph                10

         -font         Glyph font                     gdSmallFont

         -connector    Connector type                 0 (false)

         -connector_color
                       Connector color                black

         -label        Whether to draw a label        0 (false)

         -description  Whether to draw a description  0 (false)

         -strand_arrow Whether to indicate            0 (false)
                        strandedness

         -hilite       Highlight color                undef (no color)

       In addition, the alignment glyph recognizes the following glyph-specific options:

         Option         Description                  Default
         ------         -----------                  -------

         -arrow_length  Length of the directional   8
                        arrow.

Name

       Bio::Graphics::Glyph::transcript2 - The "transcript2" glyph

See Also

       Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds,
       Bio::Graphics::Glyph::crossbox, Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna,
       Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse, Bio::Graphics::Glyph::extending_arrow,
       Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
       Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line,
       Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::rndrect,
       Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
       Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation,
       Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

Synopsis

         See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

See Also