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Bio::Graphics::Glyph::arrow - the "arrow" glyph

Author

       Lincoln Stein <lstein@cshl.org>.

       Copyright (c) 2001 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl
       itself.  See DISCLAIMER.txt for disclaimers of warranty.

perl v5.30.0                                       2019-11-25                   Bio::Graphics::Glyph::arrow(3pm)

Bugs

       Please report them.

Description

       This glyph draws arrows.  Depending on options, the arrows can be labeled, be oriented vertically or
       horizontally, or can contain major and minor ticks suitable for use as a scale.

   OPTIONS
       The following options are standard among all Glyphs.  See Bio::Graphics::Glyph for a full explanation.

         Option      Description                      Default
         ------      -----------                      -------

         -fgcolor      Foreground color               black

         -outlinecolor Synonym for -fgcolor

         -bgcolor      Background color               turquoise

         -fillcolor    Synonym for -bgcolor

         -linewidth    Line width                     1

         -height       Height of glyph                10

         -font         Glyph font                     gdSmallFont

         -connector    Connector type                 0 (false)

         -connector_color
                       Connector color                black

         -label        Whether to draw a label        0 (false)

         -description  Whether to draw a description  0 (false)

         -hilite       Highlight color                undef (no color)

       In addition to the common options, the following glyph-specific options are recognized:

         Option      Description               Default
         ------      -----------               -------

         -tick       Whether to draw major             0
                     and minor ticks.
                     0 = no ticks
                     1 = major ticks
                     2 = minor ticks

         -tickcolor  Color to use for tick marks       fgcolor

         -tickwidth  Line width to use for ticks       linewidth

         -parallel   Whether to draw the arrow         1 (true)
                     parallel to the sequence
                     or perpendicular to it.

         -northeast  Force a north or east             1 (true)
                     arrowhead(depending
                     on orientation)

         -east       synonym of above

         -southwest  Force a south or west             1 (true)
                     arrowhead(depending
                     on orientation)

         -west       synonym of above

         -double     force-doubleheaded arrow          0 (false)

         -base       Draw a vertical base at the       0 (false)
                     non-arrowhead side

         -scale      Reset the labels on the arrow     0 (false)
                     to reflect an externally
                     established scale.

         -arrowstyle "regular" to create a simple      regular
                     arrowhead.  "filled" to create
                     a thick filled arrowhead

         -relative_coords
                        use relative coordinates       0 (false)
                        for scale

         -relative_coords_offset
                        set the relative offset        1
                        for scale

         -label_intervals                              0 (false)
                     Put the numeric labels on the
                     intervals between the ticks
                     rather than on the ticks
                     themselves.

         -units      add units to the tick labels      none
                     e.g. bp

         -unit_divider                                 1
                     divide tick labels by the
                     indicated amount prior to
                     displaying (use, for example
                     if you want to display in
                     cR units)

       Set -parallel to 0 (false) to display a point-like feature such as a polymorphism, or to indicate an
       important location.  If the feature start == end, then the glyph will draw a single arrow at the
       designated location:

              ^
              |

       Otherwise, there will be two arrows at the start and end:

              ^              ^
              |              |

       Scale: Pass in a externally established scale to reset the labels on the arrow.  This is particularly
       useful for manually constructed images where the founding parameters of the panel are not 1-based.  For
       example, a genetic map interval ranging from 0.1 - 0.3 can be constructed by first multiplying every
       value by 100. Passing

         arrow(-scale=>100);

       will draw tick marks labelled appropriately to your external scale.

Name

       Bio::Graphics::Glyph::arrow - the "arrow" glyph

See Also

       Bio::Graphics::Panel, Bio::Graphics::Glyph, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::cds,
       Bio::Graphics::Glyph::crossbox, Bio::Graphics::Glyph::diamond, Bio::Graphics::Glyph::dna,
       Bio::Graphics::Glyph::dot, Bio::Graphics::Glyph::ellipse, Bio::Graphics::Glyph::extending_arrow,
       Bio::Graphics::Glyph::generic, Bio::Graphics::Glyph::graded_segments,
       Bio::Graphics::Glyph::heterogeneous_segments, Bio::Graphics::Glyph::line,
       Bio::Graphics::Glyph::pinsertion, Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::rndrect,
       Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::ruler_arrow, Bio::Graphics::Glyph::toomany,
       Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2, Bio::Graphics::Glyph::translation,
       Bio::Graphics::Glyph::triangle, Bio::DB::GFF, Bio::SeqI, Bio::SeqFeatureI, Bio::Das, GD

Synopsis

         See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.

See Also