Bio::SeqIO::bsml_sax - BSML sequence input/output stream using SAX

       Email jason-at-bioperl-dot-org

        In addition to parts of the Bio:: hierarchy, this module uses:

        XML::SAX

        This object can transform Bio::Seq objects to and from BSML (XML)
        flatfiles.

MailingLists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to one of the Bioperl mailing lists.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   ReportingBugs
        Report bugs to the Bioperl bug tracking system to help us keep track
        the bugs and their resolution. Bug reports can be submitted via the
        web:

         https://github.com/bioperl/bioperl-live/issues

next_seq
        Title   : next_seq
        Usage   : my $bioSeqObj = $stream->next_seq
        Function: Retrieves the next sequence from a SeqIO::bsml stream.
        Returns : A reference to a Bio::Seq::RichSeq object
        Args    :

perl v5.32.1                                       2021-08-15                          Bio::SeqIO::bsml_sax(3pm)

       Bio::SeqIO::bsml_sax - BSML sequence input/output stream using SAX

        It is probably best not to use this object directly, but rather go
        through the SeqIO handler system. To read a BSML file:

           $stream = Bio::SeqIO->new( -file => $filename, -format => 'bsml');

           while ( my $bioSeqObj = $stream->next_seq() ) {
               # do something with $bioSeqObj
           }

        To write a Seq object to the current file handle in BSML XML format:

           $stream->write_seq( -seq => $seqObj);

        If instead you would like a XML::DOM object containing the BSML, use:

           my $newXmlObject = $stream->to_bsml( -seq => $seqObj);