Bio::SeqIO::kegg - KEGG sequence input/output stream

       The rest of the documentation details each of the object methods. Internal methods are  usually  preceded
       with a _

   next_seq
        Title   : next_seq
        Usage   : $seq = $stream->next_seq()
        Function: returns the next sequence in the stream
        Returns : Bio::Seq::RichSeq object
        Args    :

   write_seq
        Title   : write_seq
        Note    : write_seq() is not implemented for KEGG format output.

perl v5.32.1                                       2021-08-15                              Bio::SeqIO::kegg(3pm)

       Email allenday@ucla.edu

       This class transforms KEGG gene records into Bio::Seq objects.

   Mappingofrecordpropertiestoobjectproperties
       This section is supposed to document which sections and properties of a KEGG databank record end up where
       in the Bioperl object model. It is far from complete and presently focuses only on those mappings which
       may be non-obvious. $seq in the text refers to the Bio::Seq::RichSeqI implementing object returned by the
       parser for each record.

       'ENTRY'
            $seq->primary_id

       'NAME'
            $seq->display_id

       'DEFINITION'
            $seq->annotation->get_Annotations('description');

       'ORTHOLOG'
            grep {$_->database eq 'KO'} $seq->annotation->get_Annotations('dblink')

       'CLASS'
            grep {$_->database eq 'PATH'}
                     $seq->annotation->get_Annotations('dblink')

       'POSITION'
           FIXME, NOT IMPLEMENTED

       'PATHWAY'
            for my $pathway ( $seq->annotation->get_Annotations('pathway') ) {
               #
            }

       'DBLINKS'
            $seq->annotation->get_Annotations('dblink')

       'CODON_USAGE'
           FIXME, NOT IMPLEMENTED

       'AASEQ'
            $seq->translate->seq

       'NTSEQ'
            $seq-E<gt>seq

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       Bio::SeqIO::kegg - KEGG sequence input/output stream

         # It is probably best not to use this object directly, but
         # rather go through the SeqIO handler system. Go:

         use Bio::SeqIO;

         $stream = Bio::SeqIO->new(-file => $filename, -format => 'KEGG');

         while ( my $seq = $stream->next_seq() ) {
               # do something with $seq
         }