Bio::Tools::HMMER::Set - Set of identical domains from HMMER matches

       The rest of the documentation details each of the object methods. Internal methods are usually preceded
       with a _

   add_Domain
        Title   : add_Domain
        Usage   : $set->add_Domain($domain)
        Function: adds the domain to the list
        Returns : nothing
        Args    : A Bio::Tools::HMMER::Domain object

   each_Domain
        Title   : each_Domain
        Usage   : foreach $domain ( $set->each_Domain() )
        Function: returns an array of domain objects in this set
        Returns : array
        Args    : none

   name
        Title   : name
        Usage   : $obj->name($newval)
        Function:
        Example :
        Returns : value of name
        Args    : newvalue (optional)

   desc
        Title   : desc
        Usage   : $obj->desc($newval)
        Function:
        Example :
        Returns : value of desc
        Args    : newvalue (optional)

   accession
        Title   : accession
        Usage   : $obj->accession($newval)
        Function:
        Example :
        Returns : value of accession
        Args    : newvalue (optional)

   bits
        Title   : bits
        Usage   : $obj->bits($newval)
        Function:
        Example :
        Returns : value of bits
        Args    : newvalue (optional)

   evalue
        Title   : evalue
        Usage   : $obj->evalue($newval)
        Function:
        Example :
        Returns : value of evalue
        Args    : newvalue (optional)

perl v5.30.0                                       2019-10-29                        Bio::Tools::HMMER::Set(3pm)

       Email birney-at-ebi.ac.uk

       Represents a set of HMMER domains hitting one sequence. HMMER reports two different scores, a per
       sequence total score (and evalue) and a per domain score and evalue. This object represents a collection
       of the same domain with the sequence bits score and evalue. (these attributes are also on the per domain
       scores, which you can get there).

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       Bio::Tools::HMMER::Set - Set of identical domains from HMMER matches

           # get a Set object probably from the results object
           print "Bits score over set ",$set->bits," evalue ",$set->evalue,"\n";

           foreach $domain ( $set->each_Domain ) {
               print "Domain start ",$domain->start," end ",$domain->end,"\n";
           }