sc::MolecularFrequencies - The MolecularFrequencies class is used to compute the molecular frequencies
Contents
Constructor & Destructor Documentation
sc::MolecularFrequencies::MolecularFrequencies(constRef<KeyVal>&)
The KeyVal constructor.
mole
A MolecularEnergy object. If this is not given then molecule must be given.
molecule
A Molecule object. If this is not given then mole must be given.
point_group
A PointGroup object. This is the point group used to compute the finite displacements. Since some
MolecularEnergy objects cannot handle changes in the molecule's point group, the molecule must be
given $C_1$ symmetry for frequency calculations. In this case, the point_group keyword can be given
to reduce number of the displacements needed to compute the frequencies. If this is not given then
the point group of the molecule is used.
debug
An integer which, if nonzero, will cause extra output.
displacement
The amount that coordinates will be displaced. The default is 0.001.
Detailed Description
The MolecularFrequencies class is used to compute the molecular frequencies and thermodynamic
information.
Member Function Documentation
doublesc::MolecularFrequencies::freq(intirrep,inti)const[inline]
Returns the frequency, given the irrep and the index. compute_frequencies must be called first.
intsc::MolecularFrequencies::nfreq(intirrep)const[inline]
Returns the number of modes in an irrep. compute_frequencies must be called first.
voidsc::MolecularFrequencies::save_data_state(StateOut&)[virtual]
Save the base classes (with save_data_state) and the members in the same order that the StateIn CTOR
initializes them. This must be implemented by the derived class if the class has data.
Reimplemented from sc::SavableState.
Name
sc::MolecularFrequencies - The MolecularFrequencies class is used to compute the molecular frequencies
and thermodynamic information.
Synopsis
#include <molfreq.h>
Inherits sc::SavableState.
PublicMemberFunctionsMolecularFrequencies (const Ref< KeyVal > &)
The KeyVal constructor.
MolecularFrequencies (StateIn &)
void save_data_state (StateOut &)
Save the base classes (with save_data_state) and the members in the same order that the StateIn CTOR
initializes them.
Ref< Molecule > molecule () const
Return the molecule.
void compute_frequencies (const RefSymmSCMatrix &xhessian)
Given a cartesian coordinate hessian, compute the frequencies.
int nirrep () const
Returns the number if irreps.
int nfreq (int irrep) const
Returns the number of modes in an irrep.
double freq (int irrep, int i) const
Returns the frequency, given the irrep and the index.
RefSCMatrixnormal_coordinates ()
This returns the normal coordinates generated by compute_frequencies.
void thermochemistry (int degeneracy, double temp=298.15, double pres=1.0)
Computes thermochemical information using information generated by calling compute_frequencies first.
void animate (const Ref< Render > &, const Ref< MolFreqAnimate > &)
Ref< SCMatrixKit > matrixkit ()
Ref< SCMatrixKit > symmatrixkit ()
AdditionalInheritedMembers