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Bio::Annotation::TypeManager - Manages types for annotation collections

Appendix

       The rest of the documentation details each of the object methods. Internal methods are usually preceded
       with a _

   new
        Title   : new
        Usage   :
        Function:
        Example :
        Returns :
        Args    :

   type_for_key
        Title   : type_for_key
        Usage   :
        Function:
        Example :
        Returns :
        Args    :

   is_valid
        Title   : is_valid
        Usage   :
        Function:
        Example :
        Returns :
        Args    :

   _add_type_map
        Title   : _add_type_map
        Usage   :
        Function:
        Example :
        Returns :
        Args    :

perl v5.32.1                                       2021-08-15                  Bio::Annotation::TypeManager(3pm)

Author - Ewan Birney

Description

       Manages types for annotation collections.

Feedback

MailingLists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably
        to one of the Bioperl mailing lists.  Your participation is much appreciated.

         bioperl-l@bioperl.orgSupport
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   ReportingBugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution.  Bug
       reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

Name

       Bio::Annotation::TypeManager - Manages types for annotation collections

Synopsis

           # default type manager

           $tm = Bio::Annotation::TypeManager->new();

           # $key is a string or a Bio::Ontology::TermI compliant object
           print "The type for $key is ",$tm->type_for_key($key),"\n";

           if( !$tm->is_valid($key,$object) ) {
               $self->throw("Invalid object for key $key");
           }

See Also