Bio::Biblio::IO::pubmedxml - a converter of XML files with PUBMED citations
Contents
Description
This object reads bibliographic citations in XML/MEDLINE format and converts them into Bio::Biblio::RefI
objects. It is an implementation of methods defined in Bio::Biblio::IO.
The main documentation details are to be found in Bio::Biblio::IO.
Feedback
Mailinglists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
at the problem and quickly address it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reportingbugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
Bug reports can be submitted via the web:
https://redmine.open-bio.org/projects/bioperl/
Functions
handle_starthandle_end
Internal Methods
_initialize
Legal
Authors
Martin Senger <senger@ebi.ac.uk>
CopyrightandLicense
This software is Copyright (c) by 2002 European Bioinformatics Institute and released under the license
of the same terms as the perl 5 programming language system itself
perl v5.36.0 2023-02-14 Bio::Biblio::IO::pubmedxml(3pm)
Name
Bio::Biblio::IO::pubmedxml - a converter of XML files with PUBMED citations
Synopsis
Do not use this object directly, it is recommended to access it and use it through the Bio::Biblio::IO
module:
use Bio::Biblio::IO;
my $io = Bio::Biblio::IO->new(-format => 'pubmedxml');
Version
version 1.70
