Bio::Coordinate - Modules for working with biological coordinates

       Heikki Lehvaslaiho <heikki@bioperl.org>

       This software is copyright (c) by Heikki Lehvaslaiho.

       This software is available under the same terms as the perl 5 programming language system itself.

perl v5.32.0                                       2020-11-24                               Bio::Coordinate(3pm)

       Bio::Coordinate classes are used for working with various biological coordinate systems.  See
       Bio::Coordinate::Collection and Bio::Collection::Pair for examples.

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       Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reportingbugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         https://github.com/bioperl/%%7Bdist%7D

       Bio::Coordinate - Modules for working with biological coordinates

         # create Bio::Coordinate::Pairs or other Bio::Coordinate::MapperIs somehow
         $pair1; $pair2;

         # add them into a Collection
         $collection = Bio::Coordinate::Collection->new;
         $collection->add_mapper($pair1);
         $collection->add_mapper($pair2);

         # create a position and map it
         $pos = Bio::Location::Simple->new (-start => 5, -end => 9 );
         $res = $collection->map($pos);
         $res->match->start == 1;
         $res->match->end == 5;

         # if mapping is many to one (*>1) or many-to-many (*>*)
         # you have to give seq_id not get unrelevant entries
         $pos = Bio::Location::Simple->new
             (-start => 5, -end => 9 -seq_id=>'clone1');

       version 1.007001