Bio::DB::Biblio::biofetch - a BioFetch-based access to a bibliographic citation retrieval

Defaults
        Usage   : print $Bio::DB::Biblio::biofetch::DEFAULT_SERVICE;

           * Only method get_by_id() is supported

       This class uses BioFetch protocol based service to retrieve Medline references by their ID.

       The main documentation details are to be found in Bio::DB::BiblioI.

Mailinglists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reportingbugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         https://redmine.open-bio.org/projects/bioperl/

Authors
       Heikki Lehvaslaiho <heikki@bioperl.org>

   CopyrightandLicense
       This software is Copyright (c) by 2002 European Bioinformatics Institute and released under the license
       of the same terms as the perl 5 programming language system itself

perl v5.36.0                                       2023-02-14                     Bio::DB::Biblio::biofetch(3pm)

get_by_id
        Title   : get_by_id
        Usage   : $entry = $db->get__by_id('20063307')
        Function: Gets a Bio::Biblio::RefI object by its name
        Returns : a Bio::Biblio::Medline object
        Args    : the id (as a string) of the reference

   get_all
         Title   : get_all
         Usage   : $seq = $db->get_all($ref);
         Function: Retrieves reference objects from the server 'en masse',
                   rather than one  at a time.  For large numbers of sequences,
                   this is far superior than get_by_id().
         Example :
         Returns : a stream of Bio::Biblio::Medline objects
         Args    : $ref : either an array reference, a filename, or a filehandle
                   from which to get the list of unique ids/accession numbers.

   get_seq_stream
        Title   : get_seq_stream
        Usage   : my $seqio = $self->get_seq_stream(%qualifiers)
        Function: builds a url and queries a web db
        Returns : a Bio::SeqIO stream capable of producing sequence
        Args    : %qualifiers = a hash qualifiers that the implementing class
                  will process to make a url suitable for web querying

   postprocess_data
        Title   : postprocess_data
        Usage   : $self->postprocess_data ( 'type' => 'string',
                                            'location' => \$datastr);
        Function: process downloaded data before loading into a Bio::SeqIO
        Returns : void
        Args    : hash with two keys - 'type' can be 'string' or 'file'
                                     - 'location' either file location or string
                                                  reference containing data

       Bio::DB::Biblio::biofetch - a BioFetch-based access to a bibliographic citation retrieval

       Do not use this object directly, only access it through the Bio::Biblio module:

         use Bio::Biblio;
         my $biblio = Bio::Biblio->new(-access => 'biofetch');
         my $ref = $biblio->get_by_id('20063307'));

         my $ids = ['20063307', '98276153'];
         my $refio = $biblio->get_all($ids);
         while ($ref = $refio->next_bibref) {
           print $ref->identifier, "\n";
         }

       version 1.70