logo
Free, unlimited AI code reviews that run on commit
git-lrc git-lrc GitHub Install Now We'd appreciate a star git-lrc - Free, unlimited AI code reviews that run on commit | Product Hunt git-lrc - Free, unlimited AI code reviews that run on commit | Product Hunt

Bio::DB::SeqFeature::Store::berkeleydb3 -- Storage and retrieval of sequence annotation data in

Author

       Lincoln Stein <lincoln.stein@gmail.com>.

       Copyright (c) 2009 Ontario Institute for Cancer Research

       This library is free software; you can redistribute it and/or modify it under the same terms as Perl
       itself.

perl v5.40.0                                       2024-10-11              Bio::DB::SeqFe...re::berkeleydb3(3pm)

Bugs

       This is an early version, so there are certainly some bugs. Please use the BioPerl bug tracking system to
       report bugs.

Description

       This is a faster version of the berkeleydb storage adaptor for Bio::DB::SeqFeature::Store. It is used
       automatically when you create a new database with the original berkeleydb adaptor. When opening a
       database created under the original adaptor, the old code is used for backward compatibility.

       Please see Bio::DB::SeqFeature::Store::berkeleydb for full usage instructions.

Name

       Bio::DB::SeqFeature::Store::berkeleydb3 -- Storage and retrieval of sequence annotation data in
       Berkeleydb files

See Also

       bioperl, Bio::DB::SeqFeature, Bio::DB::SeqFeature::Store, Bio::DB::SeqFeature::GFF3Loader,
       Bio::DB::SeqFeature::Segment, Bio::DB::SeqFeature::Store::memory, Bio::DB::SeqFeature::Store::DBI::mysql,

Synopsis

         # Create a feature database from scratch
         $db     = Bio::DB::SeqFeature::Store->new( -adaptor => 'berkeleydb',
                                                    -dsn     => '/var/databases/fly4.3',
                                                    -create  => 1);

         # get a feature from somewhere
         my $feature = Bio::SeqFeature::Generic->new(...);

         # store it
         $db->store($feature) or die "Couldn't store!";

See Also