Bio::DB::SeqFeature::Store::berkeleydb3 -- Storage and retrieval of sequence annotation data in
Contents
Bugs
This is an early version, so there are certainly some bugs. Please use the BioPerl bug tracking system to
report bugs.
Description
This is a faster version of the berkeleydb storage adaptor for Bio::DB::SeqFeature::Store. It is used
automatically when you create a new database with the original berkeleydb adaptor. When opening a
database created under the original adaptor, the old code is used for backward compatibility.
Please see Bio::DB::SeqFeature::Store::berkeleydb for full usage instructions.
Name
Bio::DB::SeqFeature::Store::berkeleydb3 -- Storage and retrieval of sequence annotation data in
Berkeleydb files
See Also
bioperl, Bio::DB::SeqFeature, Bio::DB::SeqFeature::Store, Bio::DB::SeqFeature::GFF3Loader,
Bio::DB::SeqFeature::Segment, Bio::DB::SeqFeature::Store::memory, Bio::DB::SeqFeature::Store::DBI::mysql,
Synopsis
# Create a feature database from scratch
$db = Bio::DB::SeqFeature::Store->new( -adaptor => 'berkeleydb',
-dsn => '/var/databases/fly4.3',
-create => 1);
# get a feature from somewhere
my $feature = Bio::SeqFeature::Generic->new(...);
# store it
$db->store($feature) or die "Couldn't store!";
