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Bio::Factory::AnalysisI - An interface to analysis tool factory

Appendix

       This is actually the main documentation...

       If  you try to call any of these methods directly on this "Bio::Factory::AnalysisI" object you will get a
       notimplemented error message. You need to  call  them  on  a  "Bio::Tools::Run::AnalysisFactory"  object
       instead.

   available_categories
        Usage   : $factory->available_categories;
        Returns : an array reference with the names of
                  available categories
        Args    : none

       The  analysis tools may be grouped into categories by their functional similarity, or by the similar data
       types they deal with. This method shows all available such categories.

   available_analyses
        Usage   : $factory->available_analyses;
                  $factory->available_analyses ($category);
        Returns : an array reference with the names of
                  all available analyses, or the analyses
                  available in the given '$category'
        Args    : none || category_name

       Show available analyses. Their names usually consist of category analysis names, separated by "::".

   create_analysis
        Usage   : $factory->create_analysis ($name);
        Returns : a Bio::Tools::Run::Analyis object
        Args    : analysis name

       A real factory method creating an analysis object. The  created  object  gets  all  access  and  location
       information from the factory object.

perl v5.32.1                                       2021-08-15                       Bio::Factory::AnalysisI(3pm)

Author

       Martin Senger (martin.senger@gmail.com)

Description

       This interface contains all public methods for showing available analyses and for creating objects
       representing them.

Disclaimer

       This software is provided "as is" without warranty of any kind.

Feedback

MailingLists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   ReportingBugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

Name

       Bio::Factory::AnalysisI - An interface to analysis tool factory

See Also

Synopsis

       This is an interface module - you do not instantiate it.  Use Bio::Tools::Run::AnalysisFactory module:

         use Bio::Tools::Run::AnalysisFactory;
         my $list = Bio::Tools::Run::AnalysisFactory->new->available_analyses;

See Also