Bio::Matrix::PSM::IO::psiblast - PSM psiblast parser
Contents
Appendix
new
Title : new
Usage : my $psmIO = Bio::Matrix::PSM::IO->new(-format=>'psiblast',
-file=>$file);
Function: Associates a file with the appropriate parser
Throws :
Example :
Args :
Returns : Bio::Matrix::PSM::ProtMatrix->new(@args);
next_psm
Title : next_psm
Usage : my $psm = $psmIO->next_psm();
Function: Reads the next PSM from the input file, associated with this object
Throws : None
Returns : Bio::Matrix::PSM::ProtPsm object
Args : none
perl v5.32.1 2021-08-15 Bio::Matrix::PSM::IO::psiblast(3pm)
Description
Parser for ASCII matrices from PSI-BLAST (blastpgp program in BLAST distribution).
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Name
Bio::Matrix::PSM::IO::psiblast - PSM psiblast parser
Synopsis
See Bio::Matrix::PSM::IO for documentation
