Bio::Roary::External::Makeblastdb - Wrapper around NCBIs makeblastdb command

Author

       Andrew J. Page <ap13@sanger.ac.uk>

Copyright And License

       This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

       This is free software, licensed under:

         The GNU General Public License, Version 3, June 2007

perl v5.40.0                                       2024-12-02             Bio::Roary::External::Makeblastdb(3pm)

Methods

output_database
       Returns the path to the temporary blast database files

Name

       Bio::Roary::External::Makeblastdb - Wrapper around NCBIs makeblastdb command

Synopsis

       Take in a fasta file and create a temporary blast database.

          use Bio::Roary::External::Makeblastdb;

          my $blast_database= Bio::Roary::External::Makeblastdb->new(
            fasta_file => 'contigs.fa',
            exec       => 'makeblastdb'
          );

          $blast_database->run();