Bio::Roary::OrderGenes - Take in GFF files and create a matrix of what genes are beside what other genes

Author

       Andrew J. Page <ap13@sanger.ac.uk>

Copyright And License

       This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

       This is free software, licensed under:

         The GNU General Public License, Version 3, June 2007

perl v5.40.0                                       2024-12-02                        Bio::Roary::OrderGenes(3pm)

Name

       Bio::Roary::OrderGenes - Take in GFF files and create a matrix of what genes are beside what other genes

Synopsis

       Take in the analyse groups and create a matrix of what genes are beside what other genes
          use Bio::Roary::OrderGenes;

          my $obj = Bio::Roary::OrderGenes->new(
            analyse_groups_obj => $analyse_groups_obj,
            gff_files => ['file1.gff','file2.gff']
          );
          $obj->groups_to_contigs;