Bio::Roary::PresenceAbsenceMatrix - Create a matrix with presence and absence

Author

       Andrew J. Page <ap13@sanger.ac.uk>

Copyright And License

       This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

       This is free software, licensed under:

         The GNU General Public License, Version 3, June 2007

perl v5.40.0                                       2024-12-02             Bio::Roary::PresenceAbsenceMatrix(3pm)

Name

       Bio::Roary::PresenceAbsenceMatrix - Create a matrix with presence and absence

Synopsis

       Create a matrix with presence and absence. Since its computationally intensive to generate the inputs,
       calculate them once in the GroupStatistics module and pass them through.
          use Bio::Roary::PresenceAbsenceMatrix;

          my $obj = Bio::Roary::PresenceAbsenceMatrix->new(
            annotate_groups_obj => $annotate_groups_obj,
            output_filename     => 'gene_presence_absence.Rtab',
            sorted_file_names   => $sorted_file_names,
            groups_to_files     => $groups_to_files,
            num_files_in_groups => $num_files_in_groups,
            sample_headers      => $sample_headers,
          );
          $obj->create_matrix_file;