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Bio::Search::GenericDatabase - Generic implementation of Bio::Search::DatabaseI

Appendix

       The rest of the documentation details each of the object methods.

   name
       See Bio::Search::DatabaseI::name() for documentation

       This implementation is a combined set/get accessor.

   date
       See Bio::Search::DatabaseI::date() for documentation

       This implementation is a combined set/get accessor.

   letters
       See Bio::Search::DatabaseI::letters() for documentation

       This implementation is a combined set/get accessor.

   entries
       See Bio::Search::DatabaseI::entries() for documentation

       This implementation is a combined set/get accessor.

perl v5.32.1                                       2021-08-15                  Bio::Search::GenericDatabase(3pm)

Author

       Steve Chervitz <sac@bioperl.org>

       See the FEEDBACK section  for where to send bug reports and comments.

Description

       This module provides a basic implementation of Bio::Search::DatabaseI.  See documentation in that module
       for more information.

Disclaimer

       This software is provided "as is" without warranty of any kind.

Feedback

MailingLists
       User feedback is an integral part of the evolution of this and other Bioperl modules.  Send your comments
       and suggestions preferably to one of the Bioperl mailing lists.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   ReportingBugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug
       reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

Name

       Bio::Search::GenericDatabase - Generic implementation of Bio::Search::DatabaseI

Synopsis

           use Bio::Search::GenericDatabase;

           $db = Bio::Search::GenericDatabase->new( -name => 'my Blast db',
                                                    -date => '2001-03-13',
                                                    -length => 2352511,
                                                    -entries => 250000 );

           $name = $db->name();
           $date = $db->date();
           $num_letters = $db->letters();
           $num_entries = $db->entries();

See Also