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Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits

Appendix

       The rest of the documentation details each of the object methods. Internal methods are usually preceded
       with a _

   _initialize
        Function: where the heavy stuff will happen when new is called

   AUTOLOAD
        Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL

perl v5.32.1                                       2021-08-15                       Bio::Search::Hit::Fasta(3pm)

Author - Aaron Mackey

       Email amackey-at-virginia.edu

Description

       Bio::Search::Hit::HitI objects are data structures that contain information about specific hits obtained
       during a library search.  Some information will be algorithm-specific, but others will be generally
       defined, such as the ability to obtain alignment objects corresponding to each hit.

Feedback

MailingLists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably
        to one of the Bioperl mailing lists.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   ReportingBugs
       Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution.  Bug
       reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

Name

       Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits

See Also

       Bio::Search::Hit::HitI, Bio::Search::Hit::GenericHit, Bio::SearchIO::fasta.

Synopsis

         # You wouldn't normally create these manually;
         # instead they would be produced by Bio::SearchIO::fasta

         use Bio::Search::Hit::Fasta;
         my $hit = Bio::Search::Hit::Fasta->new(id=>'LBL_6321', desc=>'lipoprotein', e_val=>0.01);

See Also