Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
Contents
Appendix
The rest of the documentation details each of the object methods. Internal methods are usually preceded
with a _
_initialize
Function: where the heavy stuff will happen when new is called
AUTOLOAD
Function: Provide getter/setters for ID,DESC,SIZE,INITN,INIT1,OPT,ZSC,E_VAL
perl v5.32.1 2021-08-15 Bio::Search::Hit::Fasta(3pm)
Description
Bio::Search::Hit::HitI objects are data structures that contain information about specific hits obtained
during a library search. Some information will be algorithm-specific, but others will be generally
defined, such as the ability to obtain alignment objects corresponding to each hit.
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Name
Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
See Also
Bio::Search::Hit::HitI, Bio::Search::Hit::GenericHit, Bio::SearchIO::fasta.
Synopsis
# You wouldn't normally create these manually;
# instead they would be produced by Bio::SearchIO::fasta
use Bio::Search::Hit::Fasta;
my $hit = Bio::Search::Hit::Fasta->new(id=>'LBL_6321', desc=>'lipoprotein', e_val=>0.01);
