Bio::Search::HSP::FastaHSP - HSP object for FASTA specific data

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded
       with a _

   new
        Title   : new
        Usage   : my $obj = Bio::Search::HSP::FastaHSP->new();
        Function: Builds a new Bio::Search::HSP::FastaHSP object
        Returns : Bio::Search::HSP::FastaHSP
        Args    : -swscore => smith-waterman score

   sw_score
        Title   : sw_score
        Usage   : $obj->sw_score($newval)
        Function: Get/Set Smith-Waterman score
        Returns : value of sw_score
        Args    : newvalue (optional)

   evalue2
        Title   : evalue2
        Usage   : $obj->evalue2($newval)
        Function: Get/Set E2() expectation value
        Returns : value of evalue2
        Args    : newvalue (optional)

perl v5.32.1                                       2021-08-15                    Bio::Search::HSP::FastaHSP(3pm)

       Email jason-at-bioperl.org

       Describe the object here

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       Bio::Search::HSP::FastaHSP - HSP object for FASTA specific data

         # get a FastaHSP from a SearchIO stream
         my $in = Bio::SearchIO->new(-format => 'fasta', -file => 'filename.fasta');

         while( my $r = $in->next_result) {
             while( my $hit = $r->next_result ) {
                  while( my $hsp = $hit->next_hsp ) {
                     print "smith-waterman score (if available): ",
                           $hsp->sw_score(),"\n";
                  }
             }
         }