Bio::SearchIO::FastHitEventBuilder - Event Handler for SearchIO events.

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded
       with a _

   new
        Title   : new
        Usage   : my $obj = Bio::SearchIO::FastHitEventBuilder->new();
        Function: Builds a new Bio::SearchIO::FastHitEventBuilder object
        Returns : Bio::SearchIO::FastHitEventBuilder
        Args    : -hit_factory    => Bio::Factory::ObjectFactoryI
                  -result_factory => Bio::Factory::ObjectFactoryI

       See Bio::Factory::ObjectFactoryI for more information

   will_handle
        Title   : will_handle
        Usage   : if( $handler->will_handle($event_type) ) { ... }
        Function: Tests if this event builder knows how to process a specific event
        Returns : boolean
        Args    : event type name

   SAXmethodsstart_result
        Title   : start_result
        Usage   : $handler->start_result($resulttype)
        Function: Begins a result event cycle
        Returns : none
        Args    : Type of Report

   end_result
        Title   : end_result
        Usage   : my @results = $parser->end_result
        Function: Finishes a result handler cycle Returns : A Bio::Search::Result::ResultI
        Args    : none

   start_hit
        Title   : start_hit
        Usage   : $handler->start_hit()
        Function: Starts a Hit event cycle
        Returns : none
        Args    : type of event and associated hashref

   end_hit
        Title   : end_hit
        Usage   : $handler->end_hit()
        Function: Ends a Hit event cycle
        Returns : Bio::Search::Hit::HitI object
        Args    : type of event and associated hashref

   Factorymethodsregister_factory
        Title   : register_factory
        Usage   : $handler->register_factory('TYPE',$factory);
        Function: Register a specific factory for a object type class
        Returns : none
        Args    : string representing the class and
                  Bio::Factory::ObjectFactoryI

       See Bio::Factory::ObjectFactoryI for more information

   factory
        Title   : factory
        Usage   : my $f = $handler->factory('TYPE');
        Function: Retrieves the associated factory for requested 'TYPE'
        Returns : a Bio::Factory::ObjectFactoryI or undef if none registered
        Args    : name of factory class to retrieve

       See Bio::Factory::ObjectFactoryI for more information

   inclusion_threshold
       See Bio::SearchIO::blast::inclusion_threshold.

perl v5.32.1                                       2021-08-15             Bio::SearchIO::...HitEventBuilder(3pm)

       Email jason-at-bioperl.org

       This object handles Search Events generated by the SearchIO classes and build appropriate Bio::Search::*
       objects from them.  This object is intended for lightweight parsers which only want Hits and not deal
       with the overhead of HSPs.  It is a lot faster than the standard parser event handler but of course you
       are getting less information and less objects out.

MailingLists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
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   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   ReportingBugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         https://github.com/bioperl/bioperl-live/issues

       Bio::SearchIO::FastHitEventBuilder - Event Handler for SearchIO events.

         # Do not use this object directly, this object is part of the SearchIO
         # event based parsing system.

         # to use the FastHitEventBuilder do this

         use Bio::SearchIO::FastHitEventBuilder;

         my $searchio = Bio::SearchIO->new(-format => $format, -file => $file);

         $searchio->attach_EventHandler(Bio::SearchIO::FastHitEventBuilder->new());

         while( my $r = $searchio->next_result ) {
          while( my $h = $r->next_hit ) {
           # note that Hits will NOT have HSPs
          }
         }