Bio::SeqIO::gbxml - GenBank sequence input/output stream using SAX

       Email golharam-at-umdnj-dot-edu

       In addition to parts of the Bio:: hierarchy, this module uses:

       XML::SAX

       This object can transform Bio::Seq objects to and from GenBank XML flatfiles.

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next_seq
       Title   : next_seq Usage   : my $bioSeqObj = $stream->next_seq Function: Retrieves the next sequence from
       a SeqIO::gbxml stream.  Returns : A reference to a Bio::Seq::RichSeq object Args    :

perl v5.32.1                                       2021-08-15                             Bio::SeqIO::gbxml(3pm)

       Bio::SeqIO::gbxml - GenBank sequence input/output stream using SAX

       It is probably best not to use this object directly, but rather go through the SeqIO handler system. To
       read a GenBank XML file:

          $stream = Bio::SeqIO->new( -file => $filename, -format => 'gbxml');

          while ( my $bioSeqObj = $stream->next_seq() ) {
               # do something with $bioSeqObj
          }

       To write a Seq object to the current file handle in GenBank XML format:

          $stream->write_seq( -seq => $seqObj);

       If instead you would like a XML::DOM object containing the GBXML, use:

          my $newXmlObject = $stream->to_bsml( -seq => $seqObj);