Bio::Tradis::Parser::Cigar - Take in a cigar string and output start and end relative to the reference

Author

       Carla Cummins <path-help@sanger.ac.uk>

Copyright And License

       This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

       This is free software, licensed under:

         The GNU General Public License, Version 3, June 2007

perl v5.38.2                                       2024-01-25                    Bio::Tradis::Parser::Cigar(3pm)

Name

       Bio::Tradis::Parser::Cigar - Take in a cigar string and output start and end relative to the reference
       sequence

Synopsis

       Take in a cigar string and output start and end relative to the reference sequence

          use Bio::Tradis::Parser::Cigar;

          my $cigar = Bio::Tradis::Parser::Cigar->new(coordinate => 123, cigar => '10S90M');
          $cigar->start;
          $cigar->end;