Bio::Tradis - Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more

Author

       Carla Cummins <path-help@sanger.ac.uk>

Copyright And License

       This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

       This is free software, licensed under:

         The GNU General Public License, Version 3, June 2007

perl v5.38.2                                       2024-01-25                                   Bio::Tradis(3pm)

Name

       Bio::Tradis - Bio-Tradis contains a set of tools to analyse the output from TraDIS analyses. For more
       information on the TraDIS method, see http://genome.cshlp.org/content/19/12/2308

Synopsis

       Bio-Tradis provides functionality to:

       •   detect TraDIS tags in a BAM file - Bio::Tradis::DetectTags

       •   add the tags to the reads - Bio::Tradis::AddTagsToSeq

       •   filter reads in a FastQ file containing a user defined tag - Bio::Tradis::FilterTags

       •   remove tags - Bio::Tradis::RemoveTags

       •   map to a reference genome - Bio::Tradis::Map

       •   create an insertion site plot file - Bio::Tradis::TradisPlot

       Most of these functions are available as standalone scripts or as perl modules.