topic
The topic of this comment ('CATALYTIC ACTIVITY').
form
The protein form concerned by this comment (undef/empty = canonical/displayed form OR unknown)
comment
The "text" version of this comment (without evidences and new lines).
activity_rhea
The rhea id (e.g. RHEA:18037) of the reaction (only for new structured CC CATALYTIC ACTIVITY)
activity_rhea( $new_rhea_id, $new_optional_reaction_ev )
Set rhea activity to $new_rhea_id (and reaction ev to $new_optional_reaction_ev if provided) (only
for new structured CC CATALYTIC ACTIVITY)
activity_reaction
The reaction txt (e.g. agmatine + H2O = N-carbamoylputrescine + NH4(+))
activity_reaction( $new_reaction_txt )
Set reaction txt to $new_reaction_txt (on old unstructured format: extra $ev could be added)
activity_ec
The reaction EC (e.g. 3.5.3.12)
activity_ec( $new_reaction_ec, , $new_optional_reaction_ev )
Set reaction EC to $new_reaction_ec (and reaction ev to $new_optional_reaction_ev if provided) (only
for new structured CC CATALYTIC ACTIVITY)
activity_participant
The reaction participants as a String Array (e.g. [ "ChEBI:CHEBI:15377", "ChEBI:CHEBI:28938",
"ChEBI:CHEBI:58145", "ChEBI:CHEBI:58318" ]) (participant are shown as dbtype:id e.g. in
"ChEBI:CHEBI:15377" CheBI is db type, CHEBI:15377 is (CheBi) id) (only for new structured CC
CATALYTIC ACTIVITY)
activity_participant( $new_participant_array )
Set reaction participants to $new_participant_array (array of strings) (only for new structured CC
CATALYTIC ACTIVITY)
directions
The directions: Array of direction structures as hash e.g. [ { 'txt' => 'left-to-right', 'rhea' =>
'RHEA:16846', 'ev' => '{ECO:0000269|PubMed:29420286}' } ] p.s. in well formed UniProtKB data 'txt'
will be 'right-to-left' or 'left-to-right' (in that order); there should be no more than 2 directions
(minimum: 0)
direction( $new_directions )
Set directions Array to $new_directions ... (only for new structured CC CATALYTIC ACTIVITY)
new
fromText
toString
Returns a string representation of this comment.