TFBS::PatternI - interface definition for all pattern objects (currently includes matrices and word

       The rest of the documentation details each of the object methods. Internal methods are preceded with an
       underscore.

   ID
        Title   : ID
        Usage   : my $ID = $icm->ID()
                  $pfm->ID('M00119');
        Function: Get/set on the ID of the pattern (unique in a DB or a set)
        Returns : pattern ID (a string)
        Args    : none for get, string for set

   name
        Title   : name
        Usage   : my $name = $pwm->name()
                  $pfm->name('PPARgamma');
        Function: Get/set on the name of the pattern
        Returns : pattern name (a string)
        Args    : none for get, string for set

   class
        Title   : class
        Usage   : my $class = $pwm->class()
                  $pfm->class('forkhead');
        Function: Get/set on the structural class of the pattern
        Returns : class name (a string)
        Args    : none for get, string for set

   tag
        Title   : tag
        Usage   : my $acc = $pwm->tag('acc')
                  $pfm->tag(source => "Gibbs");
        Function: Get/set on the structural class of the pattern
        Returns : tag value (a scalar/reference)
        Args    : tag name (string) for get,
                  tag name (string) and value (any scalar/reference) for set

   all_tags
        Title   : all_tags
        Usage   : my %tag = $pfm->all_tags();
        Function: get a hash of all tags for a matrix
        Returns : a hash of all tag values keyed by tag name
        Args    : none

   delete_tag
        Title   : delete_tag
        Usage   : $pfm->delete_tag('score');
        Function: get a hash of all tags for a matrix
        Returns : nothing
        Args    : a string (tag name)

perl v5.40.0                                       2024-10-20                                TFBS::PatternI(3pm)

       Boris Lenhard <Boris.Lenhard@cgb.ki.se>

       TFBS::PatternI is a draft class that should contain general interface for matrix and other (future)
       pattern objects. It is not defined and not used yet, as I need to ponder over certain unresolved issues
       in general pattern definition. User feedback is more than welcome.

       Please send bug reports and other comments to the author.

       TFBS::PatternI - interface definition for all pattern objects (currently includes matrices and word
       (consensus and regular expressions )