Bio::Biblio::IO::medlinexml - a converter of XML files with MEDLINE citations
Contents
Description
This object reads bibliographic citations in XML/MEDLINE format and converts them into Bio::Biblio::RefI
objects. It is an implementation of methods defined in Bio::Biblio::IO.
The main documentation details are to be found in Bio::Biblio::IO.
Feedback
Mailinglists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
at the problem and quickly address it. Please include a thorough description of the problem with code and
data examples if at all possible.
Reportingbugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
Bug reports can be submitted via the web:
https://redmine.open-bio.org/projects/bioperl/
Functions
handle_doc_starthandle_doc_endhandle_charhandle_starthandle_end
Internal Methods
_initialize_parse_process_citation
What to do when we have the whole $citation ready
_add_element
Add $element into an array named $key to the top object at @ObjectStack; if $element is empty, take it
from @PCDataStack
_data2obj
Remove top of @PCDataStack and put it into top object at @ObjectStack under name $key
_obj2obj
Remove top of @ObjectStack and put it into now-top at @ObjectStack under name $key
_eq_hash_elem
Check if a $key exists in a ref-hash $rh and if it is equal to $value
_debug_object_stack
--- only for debugging
Legal
Authors
Martin Senger <senger@ebi.ac.uk>
CopyrightandLicense
This software is Copyright (c) by 2002 European Bioinformatics Institute and released under the license
of the same terms as the perl 5 programming language system itself
perl v5.36.0 2023-02-14 Bio::Biblio::IO::medlinexml(3pm)
Methods
next_bibref
Name
Bio::Biblio::IO::medlinexml - a converter of XML files with MEDLINE citations
Synopsis
Do not use this object directly, it is recommended to access it and use it through the Bio::Biblio::IO
module:
use Bio::Biblio::IO;
my $io = Bio::Biblio::IO->new(-format => 'medlinexml');
Version
version 1.70
