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Bio::Biblio::IO::medlinexml - a converter of XML files with MEDLINE citations

Description

       This object reads bibliographic citations in XML/MEDLINE format and converts them into Bio::Biblio::RefI
       objects. It is an implementation of methods defined in Bio::Biblio::IO.

       The main documentation details are to be found in Bio::Biblio::IO.

Feedback

Mailinglists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments
       and suggestions preferably to the Bioperl mailing list.  Your participation is much appreciated.

         bioperl-l@bioperl.org                  - General discussion
         http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list: bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look
       at the problem and quickly address it. Please include a thorough description of the problem with code and
       data examples if at all possible.

   Reportingbugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution.
       Bug reports can be submitted via the web:

         https://redmine.open-bio.org/projects/bioperl/

Functions

handle_doc_starthandle_doc_endhandle_charhandle_starthandle_end

Internal Methods

_initialize_parse_process_citation
       What to do when we have the whole $citation ready

   _add_element
       Add $element into an array named $key to the top object at @ObjectStack; if $element is empty, take it
       from @PCDataStack

   _data2obj
       Remove top of @PCDataStack and put it into top object at @ObjectStack under name $key

   _obj2obj
       Remove top of @ObjectStack and put it into now-top at @ObjectStack under name $key

   _eq_hash_elem
       Check if a $key exists in a ref-hash $rh and if it is equal to $value

   _debug_object_stack
       --- only for debugging

Methods

next_bibref

Name

       Bio::Biblio::IO::medlinexml - a converter of XML files with MEDLINE citations

Synopsis

       Do not use this object directly, it is recommended to access it and use it through the Bio::Biblio::IO
       module:

         use Bio::Biblio::IO;
         my $io = Bio::Biblio::IO->new(-format => 'medlinexml');

Version

       version 1.70

See Also