Blast-Radius Aware AI Code Review for Business-Critical Systems
LiveReview LiveReview Explore LiveReview

chromostitch.pl - Makes stitch files for feeding to geneparse.pl to allow feeding of multiple chromosomes

Description

       Makes  stitch files for feeding to geneparse.pl to allow feeding of multiple chromosomes to programs like
       murasaki

perl v5.40.0                                       2024-11-30                                    CHROMOSTITCH(1)

Name

       chromostitch.pl - Makes stitch files for feeding to geneparse.pl to allow feeding of multiple chromosomes
       to programs like murasaki

Parameters

stitchfile output file (overwrites)
       chromosome1chromosome2... List of chromosome input files
       B--output=<file> Alternate way of specifying an output file
       B--sort Always sort EVERYTHING. (Allows for nicely sorted lists from sloppy input of filenames from like
       multiple directories of *.gbk or something)

Synopsis

       chromostitch.pl [options] <stitch file> <chromosome1 chromosome2 ... >

       Options:
       --sort           sorts everything
       --output=<file>  altnerate way of specifying an output file

See Also