csg_stat - Part of the VOTCA package

       Written and maintained by the VOTCA Development Team <devs@votca.org>

       Copyright 2009-2024 The VOTCA Development Team (http://www.votca.org)

       Licensed under the Apache License, Version 2.0 (the "License"); you may not use this  file except in
       compliance with the License.  You may obtain a copy of the License at

              http://www.apache.org/licenses/LICENSE-2.0

       Unless  required by applicable law or agreed to in writing, software distributed under the License is
       distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY  KIND, either  express  or
       implied.   See  the  License  for  the  specific  language  governing permissions and limitations under
       the License.

VOTCA Development Team                         csg_stat User Manual                                  CSG_STAT(1)

       Calculate all distributions (bonded and non-bonded) specified in options file.  Optionally calculates
       update Eigen::Matrix3d for invere Monte Carlo. This program is called inside the inverse scripts. Unlike
       csg_boltzmann, big systems can be treated as well as non-bonded interactions can be evaluated.

csg_stat - Part of the VOTCA package

       Allowed options:

         -h [ --help ]             display this help and exit
         --verbose                 be loud and noisy
         --verbose1                be very loud and noisy
         -v [ --verbose2 ]         be extremly loud and noisy
         --top arg                 atomistic topology file

       Mapping options:

         --cg arg                  [OPTIONAL] coarse graining mapping and bond
                                 definitions
                                   (xml-file). If no file is given, program acts on
                                 original trajectory
         --map-ignore arg          list of molecules to ignore if mapping is done
                                 separated by ;

       Specific options:

         --options arg             options file for coarse graining
         --do-imc                  write out additional Inverse Monte Carlo data
         --include-intra           do not exclude intramolecular neighbors
         --block-length arg        write blocks of this length, the averages are
                                 cleared after every write
         --ext arg (=dist.new)   Extension of the output

       Threading options:

         --nt arg (=1)             number of threads

       Trajectory options:

         --trj arg                 atomistic trajectory file
         --begin arg (=0)          skip frames before this time (only works for
                                 Gromacs files)
         --first-frame arg (=0)    start with this frame
         --nframes arg             process the given number of frames

csg_stat [OPTIONS]

       csg_stat [--help]