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dbget - Retrieve database entries for a named database, data type and data identifier

Author

DebianMedPackagingTeam <debian-med-packaging@lists.alioth.debian.org>
           Wrote the script used to autogenerate this manual page.

Bugs

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

Description

dbget is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is
       part of the "Utils:Misc" command group(s).

Name

       dbget - Retrieve database entries for a named database, data type and data identifier

Options

Inputsection-databasestring
           This is the name of a database from the catalogue of public databases in the EMBOSS data file
           DRCAT.dat. If you are unsure of the available databases use dbfind. If you have a database name but
           are not sure its valid, use isdbname.

       -datatypestring
           This is the name of a retrievable datatype from the catalogue of public databases in the EMBOSS data
           file DRCAT.dat. The names are terms from the 'data' branch of the EDAM ontology,
           http://edamontology.sourceforge.net/. If you are unsure of the available retrievable datatypes for a
           given database, use dbtellquery. If you have a datatype name but are not sure its valid, use
           isdbdata.

       -identifierstring
           This is a data identifier (e.g. a sequence accession number) that is used to specify the data (of
           type 'datatype') to retrieve. If you're unsure of the data identifier(s) that are used for a given
           query (database/datatype) use dbtellquery. The types of data identifier are listed under the 'Data
           identifier' branch of the EDAM ontology (http://edamontology.sourceforge.net/). For example values,
           see the catalogue of public databases in the EMBOSS data file DRCAT.dat. If you have a data
           identifier but are unsure of its type, use idtell.

   RequiredsectionAdditionalsectionAdvancedsectionOutputsection-outfileoutfile
           Default value: stdout

       -outdiroutdir
           Default value: .

See Also

       dbget is fully documented via the tfm(1) system.

Synopsis

dbget-databasestring-datatypestring-identifierstring [-outfileoutfile] -outdiroutdirdbget-help

See Also