deepnano_basecall_no_metrichor - basecaller for Oxford Nanopore MinION reads based on deep recurrent

       This manpage was written by Çağrı ULAŞ for the Debian distribution and can be used for any other usage of
       the program.

       Report bugs to <https://bitbucket.org/vboza/deepnano/issues>

deepnano_basecall_no_metrichor 0.0+20110617       February 2017                DEEPNANO_BASECALL_NO_METRICHOR(1)

positionalarguments:
              reads

   optionalarguments:-h, --help
              show this help message and exit

       --template_net TEMPLATE_NET
              path to network which basecalls template (has reasonable default)

       --complement_net COMPLEMENT_NET
              path to network which basecalls complement (has reasonable default)

       --big_net BIG_NET
              path to network which basecalls 2D (has reasonable default)

       --max_2d_length MAX_2D_LENGTH
              Max length for 2d basecall

       --type TYPE
              One  of:  template,  complement,  2d,  all,  use  comma  to  separate   multiple   options,   eg.:
              template,complement type of basecalling output (defaults to all)

       --output OUTPUT
              output filename

       --directory DIRECTORY
              Directory where read files are stored

       --watch WATCH
              Watched directory

       Using without metrichor:
              OMP_NUM_THREADS=1deepnano_basecall_no_metrichor<listoffast5files>

       If you want to watch a directory (watchdog must be installed)

              OMP_NUM_THREADS=1deepnano_basecall_no_metrichor--watch<directoryname>

       deepnano_basecall_no_metrichor  -  basecaller  for  Oxford  Nanopore MinION reads based on deep recurrent
       neural networks

deepnano_basecall(1)

usage: deepnano_basecall_no_metrichor [ARGS] [reads [reads ...]]