godef - Find GO ontology terms by definition
Contents
Bugs
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
Copyright
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
redistributed under the same terms as EMBOSS itself.
EMBOSS 6.4.0 05/11/2012 GODEF(1e)
Description
godef is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is
part of the "Ontology:GO,Data retrieval:Ontology data" command group(s).
Name
godef - Find GO ontology terms by definition
Options
Inputsection-querystringAdditionalsection-namespacelist
By default all terms are returned. Searches can be limited to one or a few namespaces. Default value:
*
Advancedsection-subclassesboolean
Extend the query matches to include all terms which are specialisations (GO sub-classes) of the
matched type. Default value: N
-obsoleteboolean
The default behaviour is to not use or return obsolete terms. This option if set will include all
terms. Default value: N
Outputsection-godefoutoboSee Also
godef is fully documented via the tfm(1) system.
Synopsis
godef-querystring [-namespacelist] -subclassesboolean-obsoleteboolean-godefoutobogodef-help
