gt-compreads-refdecompress - Decodes a given RCR (Reference Compressed Reads).

-v [yes|no]
           be verbose (default: no)

       -qnames [yes|no]
           decode read names, default is to just number them (default: no)

       -ref [string]
           Index file (generated by the gt encseq tool) for reference genome. (default: undefined)

       -rcr [string]
           specify base name of file containing RCR. (default: undefined)

       -name [string]
           specify base name for decoded RCR (suffix will be ".rcr.decoded") (default: undefined)

       -help
           display help and exit

       -version
           display version information and exit

       gt-compreads-refdecompress - Decodes a given RCR (Reference Compressed Reads).

       Report bugs to https://github.com/genometools/genometools/issues.

GenomeTools 1.6.5                                  04/27/2024                              GT-COMPREADS-REFDE(1)

gtcompreadsrefdecompress [option ...] (-file file)