jaligner - Smith-Waterman algorithm with Gotoh's improvement
Contents
Examples
jaligner p53_{human,mouse}.fasta BLOSUM62 10 0.5
Homepage
http://jaligner.sourceforge.net/JALIGNER(1)
Name
jaligner - Smith-Waterman algorithm with Gotoh's improvement
Synopsis
jaligner <s1> <s2> <matrix> <open> <extend>
Or just type jaligner to see the GUI.
