kissreads2 - enhances the kissnp2 results by computing per read set

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

kissreads2 2.3.0                                  January 2019                                     KISSREADS2(1)

       [Kissreads2 options]

       -x     (0 arg) :    radseq option, homogeneous read depth along the prediction

       -predictions
              (1 arg) :    Input predictions

       -reads (1 arg) :    Input reads

       -unco  (1 arg) :    Output uncoherent file name  [default '/dev/null']

       -co    (1 arg) :    Output coherent file name

       -hamming
              (1 arg) :    Maximal hamming distance authorized while maping  [default '1']

       -coverage_file (1 arg) :
              File  (.h5)  generated  by  kissnp2,  containing  the  coverage  threshold  per read set  [default
              '_removemeplease']

       -k     (1 arg) :    Size of k, used as minial overlap and kmer spanning read coherence  [default '31']

       -index_stride
              (1 arg) :    Index Stride  [default '2']

       -size_seeds
              (1 arg) :    Size of the used seeds (distinct from the size of k)  [default '25']

       -output_fasta
              (0 arg) :    Output standard Fasta.  By  default  the  output  is  formatted  especially  for  the
              discoSnp++ pipeline

       -genotype
              (0 arg) :    Compute genotypes

       -nb-cores
              (1 arg) :    number of cores  [default '0']

       -verbose
              (1 arg) :    verbosity level  [default '1']

       -version
              (0 arg) :    version

       -help  (0 arg) :    help

       kissreads2 - enhances the kissnp2 results by computing per read set