minimap2.py - minimap2 Python3 interface

        This manpage was written by Andreas Tille for the Debian distribution and
        can be used for any other usage of the program.

minimap2.py 2.17                                    June 2020                                     MINIMAP2.PY(1)

       minimap2.py - minimap2 Python3 interface

-x STR preset: sr, map-pb, map-ont, asm5, asm10 or splice

       -n INT mininum number of minimizers

       -m INT mininum chaining score

       -k INT k-mer length

       -w INT minimizer window length

       -r INT band width

       -c     output the cs tag

minimap2.py [options] <ref.fa>|<ref.mmi><query.fq>