popt - extract Michael Zuker's p-optimal folds from subopt output.

              Ivo L. Hofacker <ivo@tbi.univie.ac.at>, Walter Fontana

       perl v5.10.1                      2011-02-01

Contributed                                           User                                               POPT(1)

       This  program  extracts  Michael Zuker's p-optimal folds from subopt output.  prints p-optimal structures
       followed by the list of pairs with respect to which they are optimal.  Input must be sorted by energy!

       In conection with RNAfold it can be used as
           RNAfold < sequence_file | b2ct > ct_file.ct

       popt - extract Michael Zuker's p-optimal folds from subopt output.

RNAsubopt(1)

       RNAsubopt -s < seq | popt