prokka-genpept_to_fasta_db - rapid annotation of prokaryotic genomes

--help This help.

       --verbose!
              Verbose progress (default '0').

       --format=s
              Input format (default 'genbank').

       --sep=s
              Separator between EC/gene/product (default '~~~').

       --blank=s
              Replace empty EC/gene/product with this (default '').

       --pseudo!
              Include /pseudo genes (default '0').

       --hypo!
              Include 'hypothetical protein' genes (default '0').

       --minlen=i
              Minimum peptide length (default '0').

prokka-genpept_to_fasta_db 1.11                   February 2015                    PROKKA-GENPEPT_TO_FASTA_DB(1)

       prokka-genpept_to_fasta_db - rapid annotation of prokaryotic genomes

prokka-genpept_to_fasta_db [options] [genome1.gbp ...] >proteins.faa