prophecy - Create frequency matrix or profile from a multiple alignment

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           Wrote the script used to autogenerate this manual page.

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
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EMBOSS 6.4.0                                       05/11/2012                                       PROPHECY(1e)

prophecy is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It
       is part of the "Nucleic:Profiles,Protein:Profiles" command group(s).

       prophecy - Create frequency matrix or profile from a multiple alignment

Inputsection-sequenceseqset-typelist
           Default value: F

       -datafilematrixf
           Default value: @($(type) = G: Epprofile H: EBLOSUM62 F: EBLOSUM62)

   Requiredsection-namestring
           Default value: mymatrix

   Profiletypespecificoptions-thresholdinteger
           Default value: 75

   Gapoptions-openfloat
           Default value: 3.0

       -extensionfloat
           Default value: 0.3

   Outputsection-outfileoutfile

       prophecy is fully documented via the tfm(1) system.

prophecy-sequenceseqset-typelist-datafilematrixf-namestring-thresholdinteger-openfloat-extensionfloat-outfileoutfileprophecy-help