propmapped - toolkit for processing next-gen sequencing data

        This manpage was written by Alexandre Mestiashvili for the Debian distribution and
        can be used for any other usage of the program.

propmapped 2.0.3                                   March 2023                                      PROPMAPPED(1)

       propMapped v2.0.4

              Calculate the proportion of mapped reads/fragments.

       Usage:

              ./prommapped [options] -i <file>

       Required arguments:

       -i <string>
              An input file containing read mapping results. Both SAM or BAM formats are supported.

       Optional arguments:

       -o <string>
              Name of output file including mapping statistics.

       -f     If  specified,  fragments (read pairs) will be counted instead of individual reads. This option is
              only applicable for paired-end reads.

       -p     If specified, only properly paired reads will be counted.  This  option  is  only  applicable  for
              paired-end reads.

       propmapped - toolkit for processing next-gen sequencing data