pxsstat - calculate multinomial alignment test statistics
Contents
Citation
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix.
Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
Copyright
Copyright © 2017-2024 FePhyFoFum License GPLv3
pxsstat 1.3.1 June 2024 PXSSTAT(1)
Description
Calculates multinomial alignment test statistics. Currently only calculates the test statistic from
Bollback (2002) MBE. This will take fasta, fastq, phylip, and nexus formats from a file or STDIN.
Name
pxsstat - calculate multinomial alignment test statistics
Options
-s, --seqf=FILE
input seq file, STDIN otherwise
-o, --outf=FILE
output sequence file, STOUT otherwise
-h, --help
display this help and exit
-V, --version
display version and exit
-C, --citation
display phyx citation and exit
Reporting Bugs
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page:
<https://github.com/FePhyFoFum/phyx>
Synopsis
pxsstat [OPTIONS]...
