pxupgma - UPGMA tree generator

Author

       Written by Joseph W. Brown, Joseph F. Walker

Citation

       Brown, Joseph W., Joseph F. Walker, and Stephen A.  Smith.  2017.  Phyx:  phylogenetic  tools  for  unix.
       Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

Copyright

       Copyright © 2015-2021 FePhyFoFum License GPLv3

pxupgma 1.2                                         June 2021                                         PXUPGMA(1)

Description

       Bare  bones  UPGMA  tree  generator  Currently  only uses uncorrected p-distances.  This will take fasta,
       fastq, phylip, and nexus formats from a file or STDIN.

Name

       pxupgma - UPGMA tree generator

Options

-s, --seqf=FILE
              input sequence file, STDIN otherwise

       -o, --outf=FILE
              output newick file, STOUT otherwise

       -h, --help
              display this help and exit

       -V,  --version
              display version and exit

       -C, --citation
              display phyx citation and exit

Reporting Bugs

       Report      bugs      to:      <https://github.com/FePhyFoFum/phyx/issues>      phyx      home      page:
       <https://github.com/FePhyFoFum/phyx>