pybel - Command line interface for PyBEL
Contents
Description
PyBEL is a pure Python package for parsing and handling biological
networks encoded in the Biological Expression Language (BEL) version
2. It also facilitates data interchange between common formats and
databases such as NetworkX, JSON, CSV, SIF, Cytoscape, CX, NDEx, SQL,
and Neo4J.
Name
pybel - Command line interface for PyBEL
Options
--version
Show the version and exit.
-c, --connection TEXT
Database connection string. [default: sqlite:////home/andreas/.pybel/pybel_0.14.0_cache.db]
--help Show this message and exit.
Commands:
compile
Compile a BEL script to a graph.
insert Insert a graph to the database.
machine
Get content from the INDRA machine and upload to BEL Commons.
manage Manage the database.
neo Upload to neo4j.
post Upload a graph to BEL Commons.
serialize
Serialize a graph to various formats.
summarize
Summarize a graph.
warnings
List warnings from a graph.
Synopsis
pybel [OPTIONS] COMMAND [ARGS]...
