rampler - module for sampling genomic sequences
Contents
Description
usage: rampler [options ...] <mode>
<mode>subsample<sequences><referencelength><coverage>[<coverage>...]
<sequences>
input file in FASTA/FASTQ format (can be compressed with gzip) containing sequences to be
subsampled
<reference length>
integer denoting length of the reference genome (or assembly) from which the sequences originate
<coverage>
integer denoting desired coverage of the subsampled sequences
split<sequences><chunksize>
<sequences>
input file in FASTA/FASTQ format (can be compressed with gzip) containing sequences which will be
split into smaller chunks
<chunk size>
integer denoting the desired chunk size in bytes
Name
rampler - module for sampling genomic sequences
Options
-o, --out-directory
default: current directory path in which sampled files will be created
--version
prints the version number
-h, --help
prints the usage
