saint-spc-noctrl - run SAINT scoring algorithm for protein-protein interaction data using label free
Contents
Description
-burnin and iter: burn-in period and main iteration of MCMC
-fthres: frequency threshold above which probability is set to 0
-fgroup: frequency boundary dividing high and low frequency groups
-var: binary [0/1] indicator for modeling variance of the count data distributions
-normalize: whether to normalize the counts by total spectral counts
Name
saint-spc-noctrl - run SAINT scoring algorithm for protein-protein interaction data using label free
quantitative proteomics data
See Also
You can download a PDF file with more detailed instructions from
http://sourceforge.net/projects/saint-apms/files/
which is called saint-vignette-<YYYYMonDD>.pdf.
saint-spc-noctrl April 2012 SAINT-SPC-NOCTRL(1)
Synopsis
saint-spc-noctrl[interactionFile][preyFile][baitFile][nburnin][niter][fthres][fgroup][var][normalize]
