samtools.pl - helper script for SAMtools

       THe software was written by Heng Li <lh3@sanger.ac.uk>

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

samtools.pl 1.2                                   December 2015                                   SAMTOOLS.PL(1)

       helper script for SAMtools

       Command:
              varFilter     filtering SNPs and short indels

              pileup2fq     generate fastq from `pileup -c'

              showALEN      print alignment length (ALEN) following CIGAR

       samtools.pl - helper script for SAMtools

samtools.pl<command> [<arguments>]