segmentFst

       Erik Garrison and vcflib contributors.

segmentFst (vcflib)                                                                                SEGMENTFST(1)

segmentFst creates genomic segments (bed file) for regions with high wcFst

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       Copyright  2011-2024  (C)  Erik Garrison and vcflib contributors.  MIT licensed.  Copyright 2020-2024 (C)
       Pjotr Prins.

segmentFst

              **segmentFst** provides a way to find continious regions with high Fst values.  It takes the output of wcFst and produces a BED file.  These high Fst region can be permutated with 'permuteGPATwindow'
              Output : 8 columns :
                   1. Seqid
                   2. Start (zero based)
                   3. End   (zero based)
                   4. Average Fst
                   5. Average high Fst (Fst > -s)
                   6. N Fst values in segment
                   7. N high fst values in segment
                   8. Segment length
              required: -f            -- Output from wcFst
              optional: -s            -- High Fst cutoff [0.8]

              Type: statistics

vcflib(1)

segmentFst -s 0.7 -f wcFst.output.txt