segmentIhs

       Erik Garrison and vcflib contributors.

segmentIhs (vcflib)                                                                                SEGMENTIHS(1)

       Creates genomic segments (bed file) for regions with high wcFst

0      Success

       not0  Failure

       Copyright  2011-2024  (C)  Erik Garrison and vcflib contributors.  MIT licensed.  Copyright 2020-2024 (C)
       Pjotr Prins.

segmentIhs

              Output : 8 columns :
                   1. Seqid
                   2. Start (zero based)
                   3. End   (zero based)
                   4. Average iHS
                   5. Average high Fst (iHS > -s)
                   6. N iHS values in segment
                   7. N high iHS values in segment
                   8. Segment length
              required: -f            -- Output from normalizeIHS
              optional: -s            -- High absolute iHS cutoff [2]

              Type: statistics

vcflib(1)

       segmentFst -s 2 -f iHS.normalized.output.txt