sga-astat - Compute Myers' a-statistic for a set of contigs using the read alignments in in.bam

       This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage
       of the program.

sga-astat 0.10.15                                September 2016                                     SGA-ASTAT(1)

       The  major  goal  of  SGA  is  to  be  very  memory  efficient,  which  is achieved by using a compressed
       representation of DNA sequence reads.

       SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers' string graph formulation of
       assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find  overlaps  between  sequence
       reads.

       sga-astat - Compute Myers' a-statistic for a set of contigs using the read alignments in in.bam

       -m=INT only compute a-stat for contigs at least INT bases in length

       -b=INT use the longest INT contigs to perform the initial estimate of the arrival rate (default: 20)

       -n=INT perform INT bootstrap iterations of the estimate

       -g=INT use INT as the genome size instead of estimating it

       --no-duplicates
              do not use duplicate reads to calculate statistics

sga-astat[options]<in.bam>