stretcher - Needleman-Wunsch rapid global alignment of two sequences

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           Wrote the script used to autogenerate this manual page.

       Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to
       the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).

       This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be
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EMBOSS 6.4.0                                       05/11/2012                                      STRETCHER(1e)

stretcher is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”).
       It is part of the "Alignment:Global" command group(s).

       stretcher - Needleman-Wunsch rapid global alignment of two sequences

Inputsection-asequencesequence-bsequencesequence-datafilematrix
           This is the scoring matrix file used when comparing sequences. By default it is the file 'EBLOSUM62'
           (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These files are found in the 'data'
           directory of the EMBOSS installation.

   Additionalsection-gapopeninteger
           Default value: @($(acdprotein)? 12 : 16)

       -gapextendinteger
           Default value: @($(acdprotein)? 2 : 4)

   Outputsection-outfilealign

       stretcher is fully documented via the tfm(1) system.

stretcher-asequencesequence-bsequencesequence [-datafilematrix] [-gapopeninteger]
                 [-gapextendinteger] -outfilealignstretcher-help